Hi Oliver,
Just for the avoidance of doubts: Are you using some X11/Wayland Weston based GUI application including a window manager? If yes, then the reported behavior is correct, because Embedded Wizard reads directly the touch events from the Kernel driver via /dev/input/event*. So if there's an additional application running (like a window manager), the touch events are shared between both apps as Embedded Wizard does not grab the events exclusively. Does that shed some lights on that?
Best regards,
Manuel